If you are moving certain folders to a new destination, folder to folder mappings is most likely what you are looking for. Movebot allows administrators to cherry-pick folders on the source and map them to a folder or other destination object.
Note: Movebot treats everything as a folder, which means the destination is interchangeable. You can map folders into Shared Drives/Team Drives, Folders within Team Drives and Users.
Adding a folder mapping
Click Add User/Drive from the project overview and navigate through the source and destination selecting the folders on the source and the destination.